PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_9E038EFF9.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 809aa    MW: 93721.6 Da    PI: 5.685
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_9E038EFF9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1638.6e-20208290191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn+YA  +GF+ ++ +++ +      +k ++ C+++gk++ + +  +++r++++ ++t+C+ak+ vk++ +g+we t++++eHnH+
  Traes_5DS_9E038EFF9.2 208 RFYNTYALLTGFEAKRGTNYMR------KKFHLICNRSGKSRATPDL-QRKRKRKSIEKTNCQAKVIVKLT-KGQWEFTTVRNEHNHP 287
                            5*****************9998......4678**********99988.99999******************.9*************** PP

                   FAR1  89 lap 91 
                            l+p
  Traes_5DS_9E038EFF9.2 288 LCP 290
                            *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-17208290IPR004330FAR1 DNA binding domain
PfamPF105517.4E-28412503IPR018289MULE transposase domain
PROSITE profilePS509669.124694730IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MPPSPGADTH KFVMGDMVTE LDEAGVRNTE NSTEQREAYN VVDDEGSPVP VLMLPSGKIK  60
YLTQEPVGNQ SMTEGRLQPA GDNYQEPVGK QSMTEGTLQP AGDNDQDPSL DSIEKNTEGL  120
LADGQDQQTN SVYHPLQQAE EENQLHDNVE SNEMLRNYSS SETDSDSSSG SDSDSEVGKY  180
FYPQIEQLEM AKQPEPGMKF ETLEDAHRFY NTYALLTGFE AKRGTNYMRK KFHLICNRSG  240
KSRATPDLQR KRKRKSIEKT NCQAKVIVKL TKGQWEFTTV RNEHNHPLCP SASLTKFYLS  300
HKHISTEERS FLKVLQRTRI PPNKVMKIFR RMRGSFGSTP FKKKDGTNLL CAEQHRKENS  360
DVGRMLMYFK EKELQDPSFQ CMKQTDEDNI VRSVFWTDAR SRMDYKIFGD FLLFDTTYTT  420
DRHNMLFAPI IGINNHGRTL LLGCALLHDE SAETYKWMFE TLLHVMEDKM PVSIITNQDE  480
AMAKAIGEVM PQVRHRLCKW DVLEKAQQNI SAFIAESGNI KADLDSLVDN SLTEKEFEEG  540
WDALIERYGA SENEYLQILW QRRKNWVPVY FREDFYPFVQ SHGCDKGMNL LFNDYVLSID  600
RIEKFIERYE EIHKNITKTD EEDRLQTGTV PSCFSLQPIE KHAADIYTRQ IFLKVQRELL  660
HSTAFNVQEV QRGAVYRLNK VFNYENPEFD RNNFEVQVES GTNAFKCQCA KFTRDGILCC  720
HIFRLFTQFG INQIPEQYIV PRWTEKFREE KEKQYKEKCS EQMDTTMRYT NFMTKMADLG  780
KTICSDGAKY DAFMLEVDKI QENFATAQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249254RKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3601620.0AK360162.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1111O12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234143.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLW5G3G60.0W5G3G6_WHEAT; Uncharacterized protein
STRINGMLOC_75367.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-81FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]